Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs57692080 | chr9:27076354 | T/A | 2.83E-10 | 219 | 15.2 | 10.98 | 0.87 | KM Plot |
| CESC | rs57706649 | chr16:1867953 | A/G | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs58566950 | chr22:43003307 | C/T | 1.46E-5 | 220 | 15 | 13.63 | 5 | KM Plot |
| CESC | rs58960900 | chr17:28996904 | G/GTATTTT | 0 | 221 | 14.27 | 9.83 | 1.23 | KM Plot |
| CESC | rs59319735 | chr16:1871967 | T/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs59391722 | chr22:21920817 | G/C | 5.62E-5 | 222 | 15.7 | 13.77 | 7.57 | KM Plot |
| CESC | rs59726966 | chr16:1867876 | T/G | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs59895877 | chr16:1868142 | G/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs60015749 | chr16:1867946 | T/TCTC | 4.58E-5 | 223 | 13.8 | 16.63 | 6.02 | KM Plot |
| CESC | rs60385764 | chr16:1868553 | C/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs60852871 | chr16:1868220 | C/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs60931808 | chr16:1868263 | A/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs61731441 | chr6:88125542 | G/A | 1.62E-7 | 223 | 14.7 | 13.23 | 5.53 | KM Plot |
| CESC | rs6454606 | chr6:88100806 | C/T | 1.62E-7 | 224 | 13.93 | 14.1 | 5.53 | KM Plot |
| CESC | rs674834 | chr13:29056305 | A/C | 1.28E-9 | 224 | 14.18 | 12.53 | 4.8 | KM Plot |